IL_6ZCE_021

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6ZCE|1|A|C|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_021 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2423

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45649.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZCE|1|A|U|318
6ZCE|1|A|U|319
6ZCE|1|A|U|320
6ZCE|1|A|C|321
6ZCE|1|A|G|322
6ZCE|1|A|A|323
*
6ZCE|1|A|U|345
6ZCE|1|A|G|346

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain J

40S ribosomal protein S8-A

Chain M

40S ribosomal protein S11-A

Chain q

Eukaryotic translation initiation factor 3 subunit C