3D structure

PDB id
6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 43S pre-initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
GCU*AAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZCE_035 not in the Motif Atlas
Homologous match to IL_4V88_417
Geometric discrepancy: 0.1299
The information below is about IL_4V88_417
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6ZCE|1|A|G|624
6ZCE|1|A|C|625
6ZCE|1|A|U|626
*
6ZCE|1|A|A|973
6ZCE|1|A|A|974
6ZCE|1|A|C|975

Current chains

Chain A
18S ribosomal RNA (1719-MER)

Nearby chains

Chain O
40S ribosomal protein S13
Chain q
Eukaryotic translation initiation factor 3 subunit C

Coloring options:


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