IL_6ZCE_050

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_050 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.1434

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZCE|1|A|G|985
6ZCE|1|A|G|986
6ZCE|1|A|G|987
6ZCE|1|A|A|988
6ZCE|1|A|U|989
6ZCE|1|A|C|990
*
6ZCE|1|A|G|1014
6ZCE|1|A|U|1015
6ZCE|1|A|C|1016

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain P

40S ribosomal protein S14-A