IL_6ZCE_071

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

6ZCE|1|A|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_071 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.1337

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZCE|1|A|C|1339
6ZCE|1|A|U|1340
6ZCE|1|A|A|1341
6ZCE|1|A|C|1342
*
6ZCE|1|A|G|1383
6ZCE|1|A|A|1384
6ZCE|1|A|G|1385

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain R

40S ribosomal protein S16-A

Chain V

40S ribosomal protein S20

Chain h

Guanine nucleotide-binding protein subunit beta-like protein