IL_6ZCE_081

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_081 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.1442

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6ZCE|1|A|G|1642
6ZCE|1|A|U|1643
6ZCE|1|A|C|1644
*
6ZCE|1|A|G|1757
6ZCE|1|A|U|1758
6ZCE|1|A|C|1759

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain i

Eukaryotic translation initiation factor 1A

Chain m

Eukaryotic translation initiation factor eIF-1