IL_6ZCE_097

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

6ZCE|1|A|C|1274, 6ZCE|1|A|U|1432, 6ZCE|1|A|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZCE|1|A|U|1272
6ZCE|1|A|G|1273
6ZCE|1|A|C|1274
6ZCE|1|A|A|1275
6ZCE|1|A|U|1276
6ZCE|1|A|G|1277
6ZCE|1|A|G|1278
*
6ZCE|1|A|U|1430
6ZCE|1|A|C|1431
6ZCE|1|A|U|1432
6ZCE|1|A|G|1433
6ZCE|1|A|U|1434
6ZCE|1|A|G|1435
6ZCE|1|A|A|1436
6ZCE|1|A|U|1437
6ZCE|1|A|G|1438

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain E

40S ribosomal protein S3

Chain L

40S ribosomal protein S10-A

Chain V

40S ribosomal protein S20

Chain e

40S ribosomal protein S29-A

Chain i

Eukaryotic translation initiation factor 1A

Chain s

Eukaryotic translation initiation factor 3 subunit J