3D structure

PDB id
6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 43S pre-initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
GUGC*GUUAUC
Length
10 nucleotides
Bulged bases
6ZCE|1|A|U|1370, 6ZCE|1|A|A|1371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZCE_098 not in the Motif Atlas
Homologous match to IL_8P9A_446
Geometric discrepancy: 0.4391
The information below is about IL_8P9A_446
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZCE|1|A|G|1352
6ZCE|1|A|U|1353
6ZCE|1|A|G|1354
6ZCE|1|A|C|1355
*
6ZCE|1|A|G|1368
6ZCE|1|A|U|1369
6ZCE|1|A|U|1370
6ZCE|1|A|A|1371
6ZCE|1|A|U|1372
6ZCE|1|A|C|1373

Current chains

Chain A
18S ribosomal RNA (1719-MER)

Nearby chains

Chain R
40S ribosomal protein S16-A
Chain U
40S ribosomal protein S19-A
Chain V
40S ribosomal protein S20

Coloring options:


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