IL_6ZCE_100

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZCE_100 not in the Motif Atlas

Geometric match to IL_4KZD_003

Geometric discrepancy: 0.2464

The information below is about IL_4KZD_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6ZCE|1|A|U|1684
6ZCE|1|A|G|1685
6ZCE|1|A|C|1686
*
6ZCE|1|A|G|1715
6ZCE|1|A|C|1716
6ZCE|1|A|G|1717

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains