IL_6ZJ3_001
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGGA(PSU)G*CUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_001 not in the Motif Atlas
- Geometric match to IL_4LFB_055
- Geometric discrepancy: 0.2705
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.3
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6ZJ3|1|LA|U|12
6ZJ3|1|LA|G|13
6ZJ3|1|LA|G|14
6ZJ3|1|LA|A|15
6ZJ3|1|LA|PSU|16
6ZJ3|1|LA|G|17
*
6ZJ3|1|LC|C|608
6ZJ3|1|LC|U|609
6ZJ3|1|LC|G|610
6ZJ3|1|LC|A|611
6ZJ3|1|LC|A|612
6ZJ3|1|LC|G|613
Current chains
- Chain LA
- 5.8S rRNA
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain Li
- Ribosomal protein uL22
- Chain Lu
- Ribosomal protein eL32
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