IL_6ZJ3_004
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GGU*A(OMC)C
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_004 not in the Motif Atlas
- Geometric match to IL_4LFB_061
- Geometric discrepancy: 0.1167
- The information below is about IL_4LFB_061
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
6ZJ3|1|LA|G|28
6ZJ3|1|LA|G|29
6ZJ3|1|LA|U|30
*
6ZJ3|1|LC|A|536
6ZJ3|1|LC|OMC|537
6ZJ3|1|LC|C|538
Current chains
- Chain LA
- 5.8S rRNA
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain Ll
- Ribosomal protein uL24
- Chain Ly
- Ribosomal protein eL37
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