IL_6ZJ3_013
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGCAG(OMU)AA*UGAACGA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_013 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.1449
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|LB|U|242
6ZJ3|1|LB|G|243
6ZJ3|1|LB|C|244
6ZJ3|1|LB|A|245
6ZJ3|1|LB|G|246
6ZJ3|1|LB|OMU|247
6ZJ3|1|LB|A|248
6ZJ3|1|LB|A|249
*
6ZJ3|1|LB|U|257
6ZJ3|1|LB|G|258
6ZJ3|1|LB|A|259
6ZJ3|1|LB|A|260
6ZJ3|1|LB|C|261
6ZJ3|1|LB|G|262
6ZJ3|1|LB|A|263
Current chains
- Chain LB
- LSU rRNA chain 1
Nearby chains
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Lb
- Ribosomal protein eL15
- Chain Le
- Ribosomal protein eL18
- Chain Lx
- Ribosomal protein eL36
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