IL_6ZJ3_026
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CAG*CCUGCCAGG
- Length
- 12 nucleotides
- Bulged bases
- 6ZJ3|1|LD|C|747, 6ZJ3|1|LD|C|748
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_026 not in the Motif Atlas
- Geometric match to IL_8C3A_151
- Geometric discrepancy: 0.3986
- The information below is about IL_8C3A_151
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6ZJ3|1|LD|C|667
6ZJ3|1|LD|A|668
6ZJ3|1|LD|G|669
*
6ZJ3|1|LD|C|743
6ZJ3|1|LD|C|744
6ZJ3|1|LD|U|745
6ZJ3|1|LD|G|746
6ZJ3|1|LD|C|747
6ZJ3|1|LD|C|748
6ZJ3|1|LD|A|749
6ZJ3|1|LD|G|750
6ZJ3|1|LD|G|751
Current chains
- Chain LD
- LSU rRNA chain 3
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain LU
- Ribosomal protein eL6
- Chain Lg
- Ribosomal protein eL20
- Chain Lr
- Ribosomal protein uL30
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