IL_6ZJ3_028

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_028 not in the Motif Atlas

Geometric match to IL_5WTK_001

Geometric discrepancy: 0.1641

The information below is about IL_5WTK_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

6ZJ3|1|LD|A|673
6ZJ3|1|LD|G|674
*
6ZJ3|1|LD|C|726
6ZJ3|1|LD|C|727
6ZJ3|1|LD|U|729

Current chains

Chain LD

LSU rRNA chain 3

Nearby chains

Chain LR

Ribosomal protein uL4

Chain LU

Ribosomal protein eL6

Chain LZ

Ribosomal protein eL14

Chain Lg

Ribosomal protein eL20