IL_6ZJ3_041
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AGA(PSU)G*CUGC(A2M)U
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_041 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.3986
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|LE|A|1020
6ZJ3|1|LE|G|1021
6ZJ3|1|LE|A|1022
6ZJ3|1|LE|PSU|1023
6ZJ3|1|LE|G|1024
*
6ZJ3|1|LE|C|1035
6ZJ3|1|LE|U|1036
6ZJ3|1|LE|G|1037
6ZJ3|1|LE|C|1038
6ZJ3|1|LE|A2M|1039
6ZJ3|1|LE|U|1040
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain Le
- Ribosomal protein eL18
- Chain Lq
- Ribosomal protein eL29
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