IL_6ZJ3_050
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGU(PSU)C*GUG(OMU)A
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LE|U|1187
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_050 not in the Motif Atlas
- Geometric match to IL_9E6Q_030
- Geometric discrepancy: 0.3791
- The information below is about IL_9E6Q_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34942.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZJ3|1|LE|U|1168
6ZJ3|1|LE|G|1169
6ZJ3|1|LE|U|1170
6ZJ3|1|LE|PSU|1171
6ZJ3|1|LE|C|1172
*
6ZJ3|1|LE|G|1186
6ZJ3|1|LE|U|1187
6ZJ3|1|LE|G|1188
6ZJ3|1|LE|OMU|1189
6ZJ3|1|LE|A|1190
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain Lt
- Ribosomal protein eL31
- Chain Ly
- Ribosomal protein eL37
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