IL_6ZJ3_051
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- G(OMG)G*CAA(OMU)C
- Length
- 8 nucleotides
- Bulged bases
- 6ZJ3|1|LE|A|1220, 6ZJ3|1|LE|A|1221
- QA status
- Modified nucleotides: OMG, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_051 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.076
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZJ3|1|LE|G|1207
6ZJ3|1|LE|OMG|1208
6ZJ3|1|LE|G|1209
*
6ZJ3|1|LE|C|1219
6ZJ3|1|LE|A|1220
6ZJ3|1|LE|A|1221
6ZJ3|1|LE|OMU|1222
6ZJ3|1|LE|C|1223
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Lb
- Ribosomal protein eL15
- Chain Li
- Ribosomal protein uL22
- Chain Ly
- Ribosomal protein eL37
Coloring options: