IL_6ZJ3_064

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

6ZJ3|1|LE|U|1405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_064 not in the Motif Atlas

Geometric match to IL_6JQ5_006

Geometric discrepancy: 0.1346

The information below is about IL_6JQ5_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

6ZJ3|1|LE|U|1404
6ZJ3|1|LE|U|1405
6ZJ3|1|LE|C|1406
*
6ZJ3|1|LE|G|1453
6ZJ3|1|LE|A|1454

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain L7

Ribosomal protein eLEgr3

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain Ld

Ribosomal protein uL18

Chain Lh

Ribosomal protein eL21

Chain Lq

Ribosomal protein eL29