IL_6ZJ3_071
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UUACA*UUACA
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|LF|C|1709
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_071 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.123
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6ZJ3|1|LF|U|1536
6ZJ3|1|LF|U|1537
6ZJ3|1|LF|A|1538
6ZJ3|1|LF|C|1539
6ZJ3|1|LF|A|1540
*
6ZJ3|1|LF|U|1706
6ZJ3|1|LF|U|1707
6ZJ3|1|LF|A|1708
6ZJ3|1|LF|C|1709
6ZJ3|1|LF|A|1710
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LD
- LSU rRNA chain 3
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain Le
- Ribosomal protein eL18
- Chain Lr
- Ribosomal protein uL30
- Chain Lu
- Ribosomal protein eL32
- Chain Lv
- Ribosomal protein eL33
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