IL_6ZJ3_076
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GA(PSU)CCCA(OMC)AAAG*CGAAAAUGGA(OMU)G(OMG)UGC
- Length
- 28 nucleotides
- Bulged bases
- 6ZJ3|1|LF|A|1674, 6ZJ3|1|LF|G|1682
- QA status
- Modified nucleotides: PSU, OMC, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_076 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1386
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|LF|G|1566
6ZJ3|1|LF|A|1567
6ZJ3|1|LF|PSU|1568
6ZJ3|1|LF|C|1569
6ZJ3|1|LF|C|1570
6ZJ3|1|LF|C|1571
6ZJ3|1|LF|A|1572
6ZJ3|1|LF|OMC|1573
6ZJ3|1|LF|A|1574
6ZJ3|1|LF|A|1575
6ZJ3|1|LF|A|1576
6ZJ3|1|LF|G|1577
*
6ZJ3|1|LF|C|1671
6ZJ3|1|LF|G|1672
6ZJ3|1|LF|A|1673
6ZJ3|1|LF|A|1674
6ZJ3|1|LF|A|1675
6ZJ3|1|LF|A|1676
6ZJ3|1|LF|U|1677
6ZJ3|1|LF|G|1678
6ZJ3|1|LF|G|1679
6ZJ3|1|LF|A|1680
6ZJ3|1|LF|OMU|1681
6ZJ3|1|LF|G|1682
6ZJ3|1|LF|OMG|1683
6ZJ3|1|LF|U|1684
6ZJ3|1|LF|G|1685
6ZJ3|1|LF|C|1686
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain L2
- Ribosomal protein eL40
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain LW
- Ribosomal protein uL13
- Chain Lc
- 60S ribosomal protein L10
- Chain Lg
- Ribosomal protein eL20
- Chain Lr
- Ribosomal protein uL30
- Chain Lv
- Ribosomal protein eL33
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