IL_6ZJ3_078
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- C(PSU)UA*U(OMG)CG
- Length
- 8 nucleotides
- Bulged bases
- 6ZJ3|1|LF|U|1587
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_078 not in the Motif Atlas
- Geometric match to IL_6AZ4_001
- Geometric discrepancy: 0.2631
- The information below is about IL_6AZ4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69145.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|LF|C|1585
6ZJ3|1|LF|PSU|1586
6ZJ3|1|LF|U|1587
6ZJ3|1|LF|A|1588
*
6ZJ3|1|LF|U|1661
6ZJ3|1|LF|OMG|1662
6ZJ3|1|LF|C|1663
6ZJ3|1|LF|G|1664
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Lg
- Ribosomal protein eL20
- Chain Lh
- Ribosomal protein eL21
Coloring options: