IL_6ZJ3_080

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CAU*AG(A2M)G

Length

7 nucleotides

Bulged bases

6ZJ3|1|LF|G|1814

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_080 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.1797

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

6ZJ3|1|LF|C|1761
6ZJ3|1|LF|A|1762
6ZJ3|1|LF|U|1763
*
6ZJ3|1|LF|A|1813
6ZJ3|1|LF|G|1814
6ZJ3|1|LF|A2M|1815
6ZJ3|1|LF|G|1816

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain LA

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large subunit ribosomal RNA; LSU rRNA

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LR

Ribosomal protein uL4

Chain La

Ribosomal protein uL15

Chain Lu

Ribosomal protein eL32