IL_6ZJ3_083
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUGAUCGUG*CUUGAGG
- Length
- 16 nucleotides
- Bulged bases
- 6ZJ3|1|LF|A|1776, 6ZJ3|1|LF|G|1803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_083 not in the Motif Atlas
- Geometric match to IL_4LFB_031
- Geometric discrepancy: 0.3665
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6ZJ3|1|LF|C|1773
6ZJ3|1|LF|U|1774
6ZJ3|1|LF|G|1775
6ZJ3|1|LF|A|1776
6ZJ3|1|LF|U|1777
6ZJ3|1|LF|C|1778
6ZJ3|1|LF|G|1779
6ZJ3|1|LF|U|1780
6ZJ3|1|LF|G|1781
*
6ZJ3|1|LF|C|1798
6ZJ3|1|LF|U|1799
6ZJ3|1|LF|U|1800
6ZJ3|1|LF|G|1801
6ZJ3|1|LF|A|1802
6ZJ3|1|LF|G|1803
6ZJ3|1|LF|G|1804
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain Li
- Ribosomal protein uL22
- Chain Ll
- Ribosomal protein uL24
- Chain Lu
- Ribosomal protein eL32
Coloring options: