IL_6ZJ3_091
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CGUGAG*CAA(A2M)CAG
- Length
- 13 nucleotides
- Bulged bases
- 6ZJ3|1|LG|C|2006
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_091 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2033
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6ZJ3|1|LF|C|1946
6ZJ3|1|LF|G|1947
6ZJ3|1|LF|U|1948
6ZJ3|1|LF|G|1949
6ZJ3|1|LF|A|1950
6ZJ3|1|LF|G|1951
*
6ZJ3|1|LG|C|2002
6ZJ3|1|LG|A|2003
6ZJ3|1|LG|A|2004
6ZJ3|1|LG|A2M|2005
6ZJ3|1|LG|C|2006
6ZJ3|1|LG|A|2007
6ZJ3|1|LG|G|2008
Current chains
- Chain LF
- LSU rRNA chain 5
- Chain LG
- LSU rRNA chain 6
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Lw
- Ribosomal protein eL34
- Chain Ly
- Ribosomal protein eL37
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