IL_6ZJ3_096

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_096 not in the Motif Atlas

Geometric match to IL_4WF9_078

Geometric discrepancy: 0.3286

The information below is about IL_4WF9_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

6ZJ3|1|LG|U|2106
6ZJ3|1|LG|C|2107
*
6ZJ3|1|LH|G|2229
6ZJ3|1|LH|C|2230
6ZJ3|1|LH|A|2231

Current chains

Chain LG

LSU rRNA chain 6

Chain LH

LSU rRNA chain 7

Nearby chains

Chain Lf

Ribosomal protein eL19

Chain Lw

Ribosomal protein eL34