IL_6ZJ3_099

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUGAU*AGCAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_099 not in the Motif Atlas

Geometric match to IL_5TBW_071

Geometric discrepancy: 0.1414

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6ZJ3|1|LG|C|2131
6ZJ3|1|LG|U|2132
6ZJ3|1|LG|G|2133
6ZJ3|1|LG|A|2134
6ZJ3|1|LG|U|2135
*
6ZJ3|1|LG|A|2193
6ZJ3|1|LG|G|2194
6ZJ3|1|LG|C|2195
6ZJ3|1|LG|A|2196
6ZJ3|1|LG|A|2197
6ZJ3|1|LG|G|2198

Current chains

Chain LG

LSU rRNA chain 6

Nearby chains

Chain Lf

Ribosomal protein eL19

Chain Lw

Ribosomal protein eL34

Chain Lz

Ribosomal protein eL38