IL_6ZJ3_100

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6ZJ3|1|LG|C|2137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_100 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.2033

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6ZJ3|1|LG|G|2136
6ZJ3|1|LG|C|2137
6ZJ3|1|LG|A|2138
*
6ZJ3|1|LG|U|2191
6ZJ3|1|LG|C|2192

Current chains

Chain LG

LSU rRNA chain 6

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain Lw

Ribosomal protein eL34

Chain Lz

Ribosomal protein eL38