IL_6ZJ3_106

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMC)(A2M)G*U(OMC)GC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_106 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2167

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6ZJ3|1|LH|G|2347
6ZJ3|1|LH|OMC|2348
6ZJ3|1|LH|A2M|2349
6ZJ3|1|LH|G|2350
*
6ZJ3|1|LH|U|2831
6ZJ3|1|LH|OMC|2832
6ZJ3|1|LH|G|2833
6ZJ3|1|LH|C|2834

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LN

LSU rRNA chain 13

Chain LQ

Ribosomal protein uL3

Chain Lt

Ribosomal protein eL31