IL_6ZJ3_110
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGCACC*GAAGAUA
- Length
- 13 nucleotides
- Bulged bases
- 6ZJ3|1|LH|G|2389
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_110 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1321
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
6ZJ3|1|LH|U|2376
6ZJ3|1|LH|G|2377
6ZJ3|1|LH|C|2378
6ZJ3|1|LH|A|2379
6ZJ3|1|LH|C|2380
6ZJ3|1|LH|C|2381
*
6ZJ3|1|LH|G|2386
6ZJ3|1|LH|A|2387
6ZJ3|1|LH|A|2388
6ZJ3|1|LH|G|2389
6ZJ3|1|LH|A|2390
6ZJ3|1|LH|U|2391
6ZJ3|1|LH|A|2392
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L3
- Ribosomal protein eL41
- Chain L5
- Ribosomal protein eL42
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
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