IL_6ZJ3_116
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGAAGG*UGGUUCCG
- Length
- 14 nucleotides
- Bulged bases
- 6ZJ3|1|LH|A|2647, 6ZJ3|1|LH|G|2663, 6ZJ3|1|LH|C|2667
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_116 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1406
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|LH|U|2644
6ZJ3|1|LH|G|2645
6ZJ3|1|LH|A|2646
6ZJ3|1|LH|A|2647
6ZJ3|1|LH|G|2648
6ZJ3|1|LH|G|2649
*
6ZJ3|1|LH|U|2661
6ZJ3|1|LH|G|2662
6ZJ3|1|LH|G|2663
6ZJ3|1|LH|U|2664
6ZJ3|1|LH|U|2665
6ZJ3|1|LH|C|2666
6ZJ3|1|LH|C|2667
6ZJ3|1|LH|G|2668
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L5
- Ribosomal protein eL42
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: