IL_6ZJ3_118
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- U(PSU)C*GGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_118 not in the Motif Atlas
- Geometric match to IL_2ET8_001
- Geometric discrepancy: 0.1983
- The information below is about IL_2ET8_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6ZJ3|1|LH|U|2678
6ZJ3|1|LH|PSU|2679
6ZJ3|1|LH|C|2680
*
6ZJ3|1|LH|G|2803
6ZJ3|1|LH|G|2804
6ZJ3|1|LH|A|2805
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L3
- Ribosomal protein eL41
- Chain L5
- Ribosomal protein eL42
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: