IL_6ZJ3_120

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6ZJ3|1|LH|A|2730, 6ZJ3|1|LH|A|2731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_120 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.1174

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6ZJ3|1|LH|U|2688
6ZJ3|1|LH|G|2689
*
6ZJ3|1|LH|U|2729
6ZJ3|1|LH|A|2730
6ZJ3|1|LH|A|2731
6ZJ3|1|LH|A|2732

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain S1

Small subunit ribosomal RNA; SSU rRNA