IL_6ZJ3_130
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- A(OMG)CGG*UCCU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_130 not in the Motif Atlas
- Geometric match to IL_8C3A_111
- Geometric discrepancy: 0.3586
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|LH|A|2878
6ZJ3|1|LH|OMG|2879
6ZJ3|1|LH|C|2880
6ZJ3|1|LH|G|2881
6ZJ3|1|LH|G|2882
*
6ZJ3|1|LI|U|3573
6ZJ3|1|LI|C|3574
6ZJ3|1|LI|C|3575
6ZJ3|1|LI|U|3576
Current chains
- Chain LH
- LSU rRNA chain 7
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- LSU rRNA chain 12
- Chain LQ
- Ribosomal protein uL3
- Chain LW
- Ribosomal protein uL13
- Chain Li
- Ribosomal protein uL22
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