IL_6ZJ3_132
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- U(OMG)U(PSU)G*CACA
- Length
- 9 nucleotides
- Bulged bases
- 6ZJ3|1|LH|U|2898
- QA status
- Modified nucleotides: OMG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_132 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.2144
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZJ3|1|LH|U|2896
6ZJ3|1|LH|OMG|2897
6ZJ3|1|LH|U|2898
6ZJ3|1|LH|PSU|2899
6ZJ3|1|LH|G|2900
*
6ZJ3|1|LI|C|3396
6ZJ3|1|LI|A|3397
6ZJ3|1|LI|C|3398
6ZJ3|1|LI|A|3399
Current chains
- Chain LH
- LSU rRNA chain 7
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain La
- Ribosomal protein uL15
- Chain Lq
- Ribosomal protein eL29
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