IL_6ZJ3_134

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

C(OMU)C*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_134 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1199

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6ZJ3|1|LH|C|2908
6ZJ3|1|LH|OMU|2909
6ZJ3|1|LH|C|2910
*
6ZJ3|1|LI|G|3180
6ZJ3|1|LI|A|3181
6ZJ3|1|LI|G|3182

Current chains

Chain LH

LSU rRNA chain 7

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L4

Ribosomal protein eL43

Chain LB

Large subunit ribosomal RNA; LSU rRNA

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain Lb

Ribosomal protein eL15

Chain S4

Transfer RNA; tRNA