IL_6ZJ3_143
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- U(PSU)U*GAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_143 not in the Motif Atlas
- Geometric match to IL_2O3X_001
- Geometric discrepancy: 0.2192
- The information below is about IL_2O3X_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6ZJ3|1|LI|U|3203
6ZJ3|1|LI|PSU|3204
6ZJ3|1|LI|U|3205
*
6ZJ3|1|LI|G|3217
6ZJ3|1|LI|A|3218
6ZJ3|1|LI|A|3219
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Lh
- Ribosomal protein eL21
- Chain Lq
- Ribosomal protein eL29
- Chain S3
- Transfer RNA; tRNA
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