IL_6ZJ3_146

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_146 not in the Motif Atlas

Geometric match to IL_1UN6_005

Geometric discrepancy: 0.104

The information below is about IL_1UN6_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6ZJ3|1|LI|G|3242
6ZJ3|1|LI|C|3243
6ZJ3|1|LI|A|3244
*
6ZJ3|1|LI|U|3256
6ZJ3|1|LI|C|3257
6ZJ3|1|LI|C|3258

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LO

5S ribosomal RNA; 5S rRNA

Chain LS

Ribosomal protein uL5

Chain Ld

Ribosomal protein uL18