IL_6ZJ3_152
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUGC*G(PSU)CG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_152 not in the Motif Atlas
- Geometric match to IL_4V88_461
- Geometric discrepancy: 0.2913
- The information below is about IL_4V88_461
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6ZJ3|1|LI|C|3418
6ZJ3|1|LI|U|3419
6ZJ3|1|LI|G|3420
6ZJ3|1|LI|C|3421
*
6ZJ3|1|LI|G|3439
6ZJ3|1|LI|PSU|3440
6ZJ3|1|LI|C|3441
6ZJ3|1|LI|G|3442
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L2
- Ribosomal protein eL40
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain S2
- Transfer RNA; tRNA
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