IL_6ZJ3_153
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_153 not in the Motif Atlas
- Geometric match to IL_7A0S_087
- Geometric discrepancy: 0.1497
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6ZJ3|1|LI|C|3421
6ZJ3|1|LI|C|3422
6ZJ3|1|LI|A|3423
6ZJ3|1|LI|A|3424
6ZJ3|1|LI|G|3425
*
6ZJ3|1|LI|C|3435
6ZJ3|1|LI|G|3436
6ZJ3|1|LI|A|3437
6ZJ3|1|LI|C|3438
6ZJ3|1|LI|G|3439
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain L2
- Ribosomal protein eL40
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain S2
- Transfer RNA; tRNA
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