IL_6ZJ3_156

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6ZJ3|1|LI|A|3528, 6ZJ3|1|LI|C|3529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_156 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.0608

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ZJ3|1|LI|C|3467
6ZJ3|1|LI|U|3468
*
6ZJ3|1|LI|A|3527
6ZJ3|1|LI|A|3528
6ZJ3|1|LI|C|3529
6ZJ3|1|LI|G|3530

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3

Chain LW

Ribosomal protein uL13

Chain LY

Ribosomal protein uL14

Chain S2

Transfer RNA; tRNA