IL_6ZJ3_165
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GAC*GCCUACAGC
- Length
- 12 nucleotides
- Bulged bases
- 6ZJ3|1|LJ|C|3735, 6ZJ3|1|LJ|U|3736, 6ZJ3|1|LJ|C|3738, 6ZJ3|1|LJ|A|3739
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_165 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.3207
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6ZJ3|1|LJ|G|3592
6ZJ3|1|LJ|A|3593
6ZJ3|1|LJ|C|3594
*
6ZJ3|1|LJ|G|3733
6ZJ3|1|LJ|C|3734
6ZJ3|1|LJ|C|3735
6ZJ3|1|LJ|U|3736
6ZJ3|1|LJ|A|3737
6ZJ3|1|LJ|C|3738
6ZJ3|1|LJ|A|3739
6ZJ3|1|LJ|G|3740
6ZJ3|1|LJ|C|3741
Current chains
- Chain LJ
- LSU rRNA chain 9
Nearby chains
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- LSU rRNA chain 11
- Chain LQ
- Ribosomal protein uL3
- Chain LW
- Ribosomal protein uL13
Coloring options: