IL_6ZJ3_170
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGG*C(PSU)A
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_170 not in the Motif Atlas
- Geometric match to IL_2ET8_001
- Geometric discrepancy: 0.2018
- The information below is about IL_2ET8_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6ZJ3|1|LJ|U|3641
6ZJ3|1|LJ|G|3642
6ZJ3|1|LJ|G|3643
*
6ZJ3|1|LJ|C|3679
6ZJ3|1|LJ|PSU|3680
6ZJ3|1|LJ|A|3681
Current chains
- Chain LJ
- LSU rRNA chain 9
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- LSU rRNA chain 12
- Chain LN
- LSU rRNA chain 13
- Chain LQ
- Ribosomal protein uL3
- Chain LY
- Ribosomal protein uL14
- Chain Lm
- Ribosomal protein eL24
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