IL_6ZJ3_179

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CC*GCUG

Length

6 nucleotides

Bulged bases

6ZJ3|1|LL|C|3878, 6ZJ3|1|LL|U|3879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_179 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1891

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6ZJ3|1|LL|C|3824
6ZJ3|1|LL|C|3825
*
6ZJ3|1|LL|G|3877
6ZJ3|1|LL|C|3878
6ZJ3|1|LL|U|3879
6ZJ3|1|LL|G|3880

Current chains

Chain LL

LSU rRNA chain 11

Nearby chains

Chain LZ

Ribosomal protein eL14