IL_6ZJ3_183

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_183 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.1671

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6ZJ3|1|LM|C|3918
6ZJ3|1|LM|G|3919
*
6ZJ3|1|LM|C|3931
6ZJ3|1|LM|U|3932
6ZJ3|1|LM|G|3933

Current chains

Chain LM

LSU rRNA chain 12

Nearby chains

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LN

LSU rRNA chain 13

Chain LQ

Ribosomal protein uL3

Chain Li

Ribosomal protein uL22

Chain Lt

Ribosomal protein eL31