IL_6ZJ3_184
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CG*CCAAGG
- Length
- 8 nucleotides
- Bulged bases
- 6ZJ3|1|LN|A|3988, 6ZJ3|1|LN|G|3989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_184 not in the Motif Atlas
- Geometric match to IL_5WLH_001
- Geometric discrepancy: 0.2724
- The information below is about IL_5WLH_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71421.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6ZJ3|1|LM|C|3943
6ZJ3|1|LM|G|3944
*
6ZJ3|1|LN|C|3985
6ZJ3|1|LN|C|3986
6ZJ3|1|LN|A|3987
6ZJ3|1|LN|A|3988
6ZJ3|1|LN|G|3989
6ZJ3|1|LN|G|3990
Current chains
- Chain LM
- LSU rRNA chain 12
- Chain LN
- LSU rRNA chain 13
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain Lt
- Ribosomal protein eL31
Coloring options: