IL_6ZJ3_185
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- 6ZJ3|1|LN|G|3980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_185 not in the Motif Atlas
- Geometric match to IL_5TBW_133
- Geometric discrepancy: 0.1495
- The information below is about IL_5TBW_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|LM|U|3947
6ZJ3|1|LM|G|3948
6ZJ3|1|LM|U|3949
6ZJ3|1|LM|A|3950
6ZJ3|1|LM|A|3951
6ZJ3|1|LM|G|3952
*
6ZJ3|1|LN|U|3978
6ZJ3|1|LN|U|3979
6ZJ3|1|LN|G|3980
6ZJ3|1|LN|A|3981
6ZJ3|1|LN|G|3982
Current chains
- Chain LM
- LSU rRNA chain 12
- Chain LN
- LSU rRNA chain 13
Nearby chains
- Chain LG
- LSU rRNA chain 6
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain Lm
- Ribosomal protein eL24
- Chain Lt
- Ribosomal protein eL31
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