IL_6ZJ3_186

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(PSU)G*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_186 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2369

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6ZJ3|1|LM|G|3952
6ZJ3|1|LM|PSU|3953
6ZJ3|1|LM|G|3954
*
6ZJ3|1|LN|C|3976
6ZJ3|1|LN|G|3977
6ZJ3|1|LN|U|3978

Current chains

Chain LM

LSU rRNA chain 12

Chain LN

LSU rRNA chain 13

Nearby chains

Chain LG

LSU rRNA chain 6

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3

Chain Lm

Ribosomal protein eL24