IL_6ZJ3_188
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_188 not in the Motif Atlas
- Geometric match to IL_4V9F_100
- Geometric discrepancy: 0.1187
- The information below is about IL_4V9F_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.3
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 47
Unit IDs
6ZJ3|1|LM|A|3958
6ZJ3|1|LM|G|3959
6ZJ3|1|LM|A|3960
6ZJ3|1|LM|G|3961
*
6ZJ3|1|LN|C|3971
6ZJ3|1|LN|G|3972
6ZJ3|1|LN|A|3973
6ZJ3|1|LN|U|3974
Current chains
- Chain LM
- LSU rRNA chain 12
- Chain LN
- LSU rRNA chain 13
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lf
- Ribosomal protein eL19
- Chain Lj
- Ribosomal protein eL22
- Chain SK
- Ribosomal protein eS8
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