IL_6ZJ3_190

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_190 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2414

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

6ZJ3|1|LN|G|4006
6ZJ3|1|LN|A|4007
6ZJ3|1|LN|G|4008
*
6ZJ3|1|LN|C|4021
6ZJ3|1|LN|C|4022

Current chains

Chain LN

LSU rRNA chain 13

Nearby chains

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3