IL_6ZJ3_191
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UA*UCA
- Length
- 5 nucleotides
- Bulged bases
- 6ZJ3|1|LO|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_191 not in the Motif Atlas
- Homologous match to IL_5TBW_372
- Geometric discrepancy: 0.2518
- The information below is about IL_5TBW_372
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6ZJ3|1|LO|U|15
6ZJ3|1|LO|A|16
*
6ZJ3|1|LO|U|62
6ZJ3|1|LO|C|63
6ZJ3|1|LO|A|64
Current chains
- Chain LO
- 5S rRNA
Nearby chains
- Chain L6
- Ribosomal protein eLEgr2
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LS
- Ribosomal protein uL5
- Chain Lc
- 60S ribosomal protein L10
- Chain Ld
- Ribosomal protein uL18
Coloring options: