IL_6ZJ3_194

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AACCC*GAUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_194 not in the Motif Atlas

Geometric match to IL_4WF9_115

Geometric discrepancy: 0.2583

The information below is about IL_4WF9_115

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

6ZJ3|1|LO|A|32
6ZJ3|1|LO|A|33
6ZJ3|1|LO|C|34
6ZJ3|1|LO|C|35
6ZJ3|1|LO|C|36
*
6ZJ3|1|LO|G|41
6ZJ3|1|LO|A|42
6ZJ3|1|LO|U|43
6ZJ3|1|LO|U|44
6ZJ3|1|LO|U|45

Current chains

Chain LO

5S rRNA

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LS

Ribosomal protein uL5

Chain Ld

Ribosomal protein uL18